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Empezado por bustio
como le hago este "Append" al fichero desde el MySql?
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No se puede. El manual de MySql específicamente dice:
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The SELECT ... INTO OUTFILE 'file_name' form of SELECT writes the selected rows to a file. The file is created on the server host, so you must have the FILE privilege to use this syntax. The file cannot currently exist, which among other things prevents files such as /etc/passwd and database tables from being destroyed.
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// Saludos